Archive

2024  51

November  6

文献–单细胞组学大模型之CellPLM

Create: 2024-11-16 | Update: 2024-11-16 | Words: 2167 | 5 min | Lishensuo

文献–单细胞组学大模型之scBERT

Create: 2024-11-09 | Update: 2024-11-09 | Words: 1150 | 3 min | Lishensuo

单机多卡torchrun分布式训练

Create: 2024-11-09 | Update: 2024-11-09 | Words: 1622 | 4 min | Lishensuo

单细胞分析工具–scVI去除批次效应

Create: 2024-11-05 | Update: 2024-11-05 | Words: 1342 | 3 min | Lishensuo

Shell_Python_R脚本基础

Create: 2024-11-05 | Update: 2024-11-05 | Words: 452 | 1 min | Lishensuo

torch张量的维度操作

Create: 2024-11-05 | Update: 2024-11-05 | Words: 715 | 2 min | Lishensuo

October  14

GPU,CUDA以及Pytorch之间的关系

Create: 2024-10-28 | Update: 2024-10-28 | Words: 591 | 2 min | Lishensuo

深度学习常规Config训练配置

Create: 2024-10-28 | Update: 2024-10-28 | Words: 1553 | 4 min | Lishensuo

Flash Attention注意力优化

Create: 2024-10-28 | Update: 2024-10-28 | Words: 3058 | 7 min | Lishensuo

机器学习日志指标log记录

Create: 2024-10-28 | Update: 2024-10-28 | Words: 1617 | 4 min | Lishensuo

Python-Dunder双下划线特殊方法

Create: 2024-10-16 | Update: 2024-10-16 | Words: 1025 | 3 min | Lishensuo

Python-装饰器Decorator

Create: 2024-10-16 | Update: 2024-10-16 | Words: 945 | 2 min | Lishensuo

单细胞分析工具–CELLxGENE数据库

Create: 2024-10-16 | Update: 2024-10-16 | Words: 2160 | 5 min | Lishensuo

Hugging Face(1)-NLP basic

Create: 2024-10-16 | Update: 2024-10-16 | Words: 2409 | 5 min | Lishensuo

Hugging Face(3)-Tokenizer库

Create: 2024-10-16 | Update: 2024-10-16 | Words: 1144 | 3 min | Lishensuo

Hugging Face(2)-Datasets库

Create: 2024-10-16 | Update: 2024-10-16 | Words: 1309 | 3 min | Lishensuo

Torchtext构建Vocab词表

Create: 2024-10-16 | Update: 2024-10-16 | Words: 508 | 2 min | Lishensuo

Pytorch-Dataset与Dataloader的使用.

Create: 2024-10-16 | Update: 2024-10-16 | Words: 1006 | 3 min | Lishensuo

Pytorch-常用神经网络层

Create: 2024-10-16 | Update: 2024-10-16 | Words: 691 | 2 min | Lishensuo

UCSCXenaShiny V2简要教程

Create: 2024-10-05 | Update: 2024-10-05 | Words: 1999 | 4 min | Lishensuo

September  5

文献–单细胞组学大模型之scGPT

Create: 2024-09-29 | Update: 2024-09-29 | Words: 6652 | 14 min | Lishensuo

Snakemake流程搭建

Create: 2024-09-22 | Update: 2024-09-22 | Words: 2451 | 5 min | Lishensuo

文献–前列腺癌基础学习

Create: 2024-09-19 | Update: 2024-09-19 | Words: 4630 | 10 min | Lishensuo

单细胞分析工具–Seurat5基础用法

Create: 2024-09-17 | Update: 2024-09-17 | Words: 2484 | 5 min | Lishensuo

深度学习–GAN基础

Create: 2024-09-03 | Update: 2024-09-03 | Words: 2787 | 6 min | Lishensuo

August  7

D2L–第十一及十二章优化算法&多GPU并行

Create: 2024-08-24 | Update: 2024-08-24 | Words: 4817 | 10 min | Lishensuo

D2L–第十章注意力机制与Transformer

Create: 2024-08-17 | Update: 2024-08-17 | Words: 10697 | 22 min | Lishensuo

D2L–第十四及十五章BERT模型

Create: 2024-08-17 | Update: 2024-08-17 | Words: 6808 | 14 min | Lishensuo

D2L–第八章循环神经网络

Create: 2024-08-11 | Update: 2024-08-11 | Words: 7881 | 16 min | Lishensuo

D2L–第九章现代循环神经网络

Create: 2024-08-11 | Update: 2024-08-11 | Words: 8148 | 17 min | Lishensuo

D2L–第六章卷积神经网络

Create: 2024-08-04 | Update: 2024-08-04 | Words: 4105 | 9 min | Lishensuo

D2L–第七章现代卷积神经网络

Create: 2024-08-04 | Update: 2024-08-04 | Words: 7080 | 15 min | Lishensuo

July  4

D2L–第四章多层感知机

Create: 2024-07-28 | Update: 2024-07-28 | Words: 4159 | 9 min | Lishensuo

D2L–第五章深度学习计算

Create: 2024-07-28 | Update: 2024-07-28 | Words: 2955 | 6 min | Lishensuo

D2L–第二章预备知识

Create: 2024-07-21 | Update: 2024-07-21 | Words: 2515 | 6 min | Lishensuo

D2L–第三章线性神经网络

Create: 2024-07-21 | Update: 2024-07-21 | Words: 4277 | 9 min | Lishensuo

June  1

机器学习基于R(0)–mlr3基本流程 V2

Create: 2024-06-18 | Update: 2022-06-18 | Words: 4081 | 9 min | Lishensuo

April  3

renv包环境可重复性

Create: 2024-04-06 | Update: 2024-04-06 | Words: 526 | 2 min | Lishensuo

rhinoverse系列-rhino包

Create: 2024-04-06 | Update: 2024-04-06 | Words: 1530 | 4 min | Lishensuo

rhinoverse系列-shiny.router包

Create: 2024-04-06 | Update: 2024-04-06 | Words: 1313 | 3 min | Lishensuo

March  11

Shiny-basic-1-IO

Create: 2024-03-31 | Update: 2024-03-31 | Words: 1687 | 4 min | Lishensuo

Shiny-basic-2-Layout

Create: 2024-03-31 | Update: 2024-03-31 | Words: 842 | 2 min | Lishensuo

Shiny-basic-3-Reactive

Create: 2024-03-31 | Update: 2024-03-31 | Words: 695 | 2 min | Lishensuo

Shiny-basic-4-Feedback

Create: 2024-03-31 | Update: 2024-03-31 | Words: 1525 | 4 min | Lishensuo

Shiny-basic-5-Module

Create: 2024-03-31 | Update: 2024-03-31 | Words: 666 | 2 min | Lishensuo

Shiny-pkg-1-shinyWidgets

Create: 2024-03-31 | Update: 2024-03-31 | Words: 563 | 2 min | Lishensuo

Shiny-pkg-2-shinyJS

Create: 2024-03-31 | Update: 2024-03-31 | Words: 896 | 2 min | Lishensuo

Shiny-pkg-3-shinydashboard

Create: 2024-03-31 | Update: 2024-03-31 | Words: 1350 | 3 min | Lishensuo

Shiny-pkg-4-shinydashboardPlus

Create: 2024-03-31 | Update: 2024-03-31 | Words: 2522 | 6 min | Lishensuo

Shiny-pkg-5-bslib

Create: 2024-03-31 | Update: 2024-03-31 | Words: 1245 | 3 min | Lishensuo

Shiny-pkg-6-others

Create: 2024-03-31 | Update: 2024-03-31 | Words: 699 | 2 min | Lishensuo

2023  72

November  1

UCSCXenaShiny development tutorials(231119)

Create: 2023-11-19 | Update: 2023-11-19 | Words: 1198 | 3 min | Lishensuo

August  2

shiny包开发网页APP进阶

Create: 2023-08-13 | Update: 2023-08-13 | Words: 1907 | 4 min | Lishensuo

单细胞分析工具–ShinyCell交互式展示单细胞数据

Create: 2023-08-07 | Update: 2023-08-07 | Words: 2383 | 5 min | Lishensuo

July  3

ChemmineR处理化合物信息的基础工具R包

Create: 2023-07-20 | Update: 2022-07-20 | Words: 1052 | 3 min | Lishensuo

R包purrr的函数编程

Create: 2023-07-09 | Update: 2023-07-09 | Words: 1580 | 4 min | Lishensuo

单细胞分析工具–COSG鉴定marker基因

Create: 2023-07-01 | Update: 2023-07-01 | Words: 894 | 2 min | Lishensuo

June  5

文献–浆细胞(Plasma cells)在膀胱癌(Bladder cancer)中的预后分析

Create: 2023-06-23 | Update: 2023-06-23 | Words: 1402 | 3 min | Lishensuo

文献–基于泛癌scRNAseq的T细胞图谱整合分析

Create: 2023-06-18 | Update: 2023-06-18 | Words: 2200 | 5 min | Lishensuo

R包NMF非负矩阵分解

Create: 2023-06-17 | Update: 2023-06-17 | Words: 1038 | 3 min | Lishensuo

R–可视化-funkyheatmap绘制table热图

Create: 2023-06-13 | Update: 2023-06-13 | Words: 1042 | 3 min | Lishensuo

BayesPrism包根据scRNAseq预测Bulk细胞组成

Create: 2023-06-03 | Update: 2023-06-03 | Words: 1352 | 3 min | Lishensuo

May  2

IOBR包肿瘤signature打分与免疫浸润分析

Create: 2023-05-15 | Update: 2023-05-15 | Words: 1667 | 4 min | Lishensuo

UCSCXenaShiny包肿瘤数据分析可视化

Create: 2023-05-12 | Update: 2023-05-12 | Words: 1745 | 4 min | Lishensuo

April  17

单细胞分析工具–sccode综合差异分析

Create: 2023-04-30 | Update: 2023-04-30 | Words: 631 | 2 min | Lishensuo

单细胞分析工具–sccoda细胞组成比较

Create: 2023-04-30 | Update: 2023-04-30 | Words: 840 | 2 min | Lishensuo

诺模图或列线图绘制分析

Create: 2023-04-28 | Update: 2023-04-28 | Words: 585 | 2 min | Lishensuo

单细胞分析工具–celldancer细胞速率分析

Create: 2023-04-22 | Update: 2023-04-22 | Words: 1951 | 4 min | Lishensuo

R–可视化-ggbeeswarm绘制蜂群图

Create: 2023-04-22 | Update: 2023-04-22 | Words: 285 | 1 min | Lishensuo

R–可视化-ggsignif注释显著性

Create: 2023-04-22 | Update: 2023-04-22 | Words: 357 | 1 min | Lishensuo

肿瘤亚型分群工具ConsensusClusterPlus

Create: 2023-04-20 | Update: 2023-04-20 | Words: 905 | 2 min | Lishensuo

单细胞分析工具–scSTAR挖掘分组样本细胞亚型

Create: 2023-04-17 | Update: 2023-04-17 | Words: 1152 | 3 min | Lishensuo

文献–生信套路之肿瘤预后

Create: 2023-04-17 | Update: 2024-04-17 | Words: 2251 | 5 min | Lishensuo

文献–ccRCC单细胞转录组

Create: 2023-04-17 | Update: 2024-04-17 | Words: 986 | 2 min | Lishensuo

文献–髓鞘脱失与再生模型小鼠snRNAseq数据分析

Create: 2023-04-17 | Update: 2023-04-17 | Words: 1115 | 3 min | Lishensuo

TCGA的SNV数据下载与maftools可视化

Create: 2023-04-09 | Update: 2023-04-09 | Words: 608 | 2 min | Lishensuo

R-可视化–ggplot绘制散点图添加边际图

Create: 2023-04-09 | Update: 2023-04-09 | Words: 1525 | 4 min | Lishensuo

生信相关网站数据库集锦

Create: 2023-04-02 | Update: 2023-04-02 | Words: 832 | 2 min | Lishensuo

文献-数据挖掘-肾癌与凝血相关基因

Create: 2023-04-01 | Update: 2023-04-01 | Words: 1003 | 3 min | Lishensuo

文献-数据挖掘-肺腺癌相关基因对

Create: 2023-04-01 | Update: 2023-04-01 | Words: 534 | 2 min | Lishensuo

R-可视化–corrplot相关性绘图

Create: 2023-04-01 | Update: 2023-04-01 | Words: 564 | 2 min | Lishensuo

March  9

MuSiC包根据scRNAseq预测Bulk细胞组成

Create: 2023-03-26 | Update: 2023-03-26 | Words: 1799 | 4 min | Lishensuo

Shell_Python_R脚本基础

Create: 2023-03-25 | Update: 2023-03-25 | Words: 487 | 1 min | Lishensuo

化合物指纹与描述符生成系列工具

Create: 2023-03-20 | Update: 2023-03-20 | Words: 1070 | 3 min | Lishensuo

ClusterGVis包绘制基因表达矩阵热图

Create: 2023-03-19 | Update: 2023-03-19 | Words: 1261 | 3 min | Lishensuo

单细胞分析工具–Asgard单细胞药物重定向

Create: 2023-03-18 | Update: 2023-03-18 | Words: 1962 | 4 min | Lishensuo

单细胞分析工具–scCustomize包改进Seurat可视化

Create: 2023-03-11 | Update: 2023-03-11 | Words: 735 | 2 min | Lishensuo

R-可视化–饼图与环图

Create: 2023-03-11 | Update: 2023-03-11 | Words: 628 | 2 min | Lishensuo

R-可视化–ggplot标注文本标签text&label

Create: 2023-03-11 | Update: 2023-03-11 | Words: 656 | 2 min | Lishensuo

单细胞分析工具–MARVEL单细胞可变剪切

Create: 2023-03-06 | Update: 2023-03-06 | Words: 6473 | 13 min | Lishensuo

February  9

深度学习–VAE变分自动编码器

Create: 2023-02-21 | Update: 2023-02-21 | Words: 1467 | 3 min | Lishensuo

单细胞分析工具–Scissor表型相关亚群鉴定

Create: 2023-02-19 | Update: 2023-02-19 | Words: 1499 | 3 min | Lishensuo

单细胞分析工具–MAST差异基因分析

Create: 2023-02-10 | Update: 2023-02-10 | Words: 1131 | 3 min | Lishensuo

文献–机器学习模型预测药物肾毒性-1

Create: 2023-02-10 | Update: 2022-02-10 | Words: 737 | 2 min | Lishensuo

文献–机器学习模型预测药物肾毒性-2

Create: 2023-02-10 | Update: 2022-02-10 | Words: 1073 | 3 min | Lishensuo

单细胞分析工具–NicheNet细胞通讯分析

Create: 2023-02-09 | Update: 2023-02-09 | Words: 4148 | 9 min | Lishensuo

单细胞分析工具–基于文献的细胞类型注释marker

Create: 2023-02-07 | Update: 2023-02-07 | Words: 1705 | 4 min | Lishensuo

文献–克罗恩肠炎疾病的大型单细胞图谱

Create: 2023-02-05 | Update: 2023-02-05 | Words: 1823 | 4 min | Lishensuo

文献–immuCan肿瘤微环境单细胞数据库

Create: 2023-02-02 | Update: 2023-02-02 | Words: 1187 | 3 min | Lishensuo

January  24

从RNAseq的fastq.gz提取表达矩阵

Create: 2023-01-29 | Update: 2023-01-29 | Words: 2347 | 5 min | Lishensuo

hugo+github搭建我的个人博客

Create: 2023-01-29 | Update: 2023-01-29 | Words: 2509 | 6 min | Lishensuo

单细胞分析工具–cellphonedb细胞通讯分析

Create: 2023-01-28 | Update: 2023-01-28 | Words: 2488 | 5 min | Lishensuo

单细胞分析工具–DoubletFinder识别双细胞

Create: 2023-01-28 | Update: 2023-01-28 | Words: 1340 | 3 min | Lishensuo

survival包生存分析及glmnet包lasso回归

Create: 2023-01-28 | Update: 2023-01-29 | Words: 3504 | 7 min | Lishensuo

单细胞分析工具–RNAvelocity速率分析

Create: 2023-01-26 | Update: 2023-01-26 | Words: 1965 | 4 min | Lishensuo

单细胞分析工具–CytoTRACE轨迹分析

Create: 2023-01-26 | Update: 2023-01-26 | Words: 1166 | 3 min | Lishensuo

单细胞分析工具–scanpy基础用法

Create: 2023-01-23 | Update: 2023-01-23 | Words: 857 | 2 min | Lishensuo

单细胞分析工具–细胞周期分析

Create: 2023-01-22 | Update: 2023-01-22 | Words: 1533 | 4 min | Lishensuo

单细胞分析工具–多样本批次校正

Create: 2023-01-22 | Update: 2023-01-22 | Words: 1385 | 3 min | Lishensuo

单细胞分析工具–SingleCellExperiment对象格式

Create: 2023-01-22 | Update: 2023-01-22 | Words: 1462 | 3 min | Lishensuo

基于Rstudio创建R包

Create: 2023-01-22 | Update: 2023-01-22 | Words: 2828 | 6 min | Lishensuo

单细胞分析工具–infercnv拷贝数变异鉴定

Create: 2023-01-20 | Update: 2023-01-20 | Words: 1907 | 4 min | Lishensuo

单细胞分析工具–SingleR细胞类型注释

Create: 2023-01-20 | Update: 2023-01-20 | Words: 1080 | 3 min | Lishensuo

单细胞分析工具–ECAUGT提取hECA数据

Create: 2023-01-19 | Update: 2023-01-19 | Words: 929 | 2 min | Lishensuo

文献–hECA人类单细胞表达图谱平台

Create: 2023-01-19 | Update: 2023-01-19 | Words: 1550 | 4 min | Lishensuo

R-可视化–弦图chordDiagram

Create: 2023-01-16 | Update: 2023-01-16 | Words: 1739 | 4 min | Lishensuo

R-可视化–桑基(sankey)与冲击(alluvial)图ggsankey

Create: 2023-01-16 | Update: 2023-01-16 | Words: 1107 | 3 min | Lishensuo

GSVA包单样本富集分析

Create: 2023-01-15 | Update: 2023-01-15 | Words: 872 | 2 min | Lishensuo

clusterProfiler包富集分析与可视化

Create: 2023-01-14 | Update: 2023-01-14 | Words: 3645 | 8 min | Lishensuo

富集通路可视化方式

Create: 2023-01-14 | Update: 2023-06-17 | Words: 1544 | 4 min | Lishensuo

GSEA富集分析工具

Create: 2023-01-13 | Update: 2023-01-13 | Words: 1154 | 3 min | Lishensuo

单细胞分析工具–Palantir轨迹分析

Create: 2023-01-12 | Update: 2023-01-12 | Words: 1146 | 3 min | Lishensuo

文献–小鼠前列腺癌单细胞数据分析

Create: 2023-01-10 | Update: 2022-01-10 | Words: 2776 | 6 min | Lishensuo

2022  125

December  3

文献–WGCNA发现的卵巢癌肿瘤相关成纤维细胞的预后模型

Create: 2022-12-18 | Update: 2022-12-18 | Words: 1793 | 4 min | Lishensuo

文献–小鼠缺血性中风单细胞数据分析

Create: 2022-12-11 | Update: 2022-12-11 | Words: 1311 | 3 min | Lishensuo

文献–椎间盘退行性疾病bulk与scRNA-seq数据挖掘

Create: 2022-12-01 | Update: 2022-12-01 | Words: 1042 | 3 min | Lishensuo

November  4

文献–基于肝细胞癌M2样肿瘤巨噬细胞建立预后模型

Create: 2022-11-13 | Update: 2022-11-13 | Words: 1566 | 4 min | Lishensuo

R-可视化-ggplot+ggpubr绘制箱图boxplot

Create: 2022-11-05 | Update: 2022-11-05 | Words: 1667 | 4 min | Lishensuo

R-可视化-ggplot绘制常规柱状图barplot

Create: 2022-11-05 | Update: 2022-11-05 | Words: 1331 | 3 min | Lishensuo

R-可视化-绘图颜色与画板的选择

Create: 2022-11-05 | Update: 2022-11-05 | Words: 1339 | 3 min | Lishensuo

October  4

文献–挖掘AD单细胞数据分析NK浸润

Create: 2022-10-30 | Update: 2022-10-30 | Words: 780 | 2 min | Lishensuo

MySQL初学

Create: 2022-10-22 | Update: 2022-10-22 | Words: 5355 | 11 min | Lishensuo

化合物敏感度数据库GDSC_CTRL

Create: 2022-10-09 | Update: 2022-10-09 | Words: 1391 | 3 min | Lishensuo

文献–肝癌空间转录组数据分析

Create: 2022-10-08 | Update: 2022-10-08 | Words: 2425 | 5 min | Lishensuo

September  8

Python-threading多线程

Create: 2022-09-19 | Update: 2022-09-19 | Words: 848 | 2 min | Lishensuo

Python-lambda函数表达式

Create: 2022-09-17 | Update: 2022-09-17 | Words: 718 | 2 min | Lishensuo

R-可视化-韦恩图venn

Create: 2022-09-10 | Update: 2022-09-10 | Words: 2104 | 5 min | Lishensuo

初识slurm基础操作

Create: 2022-09-10 | Update: 2022-09-10 | Words: 2031 | 5 min | Lishensuo

机器学习基于sklearn(2)–交叉验证与超参数优化

Create: 2022-09-04 | Update: 2022-09-04 | Words: 1089 | 3 min | Lishensuo

机器学习基于sklearn(3)–常见分类任务学习器

Create: 2022-09-04 | Update: 2022-09-04 | Words: 648 | 2 min | Lishensuo

机器学习基于sklearn(4)–常见回归任务学习器

Create: 2022-09-04 | Update: 2022-09-04 | Words: 578 | 2 min | Lishensuo

R-可视化-拼图patchwork

Create: 2022-09-04 | Update: 2022-09-04 | Words: 1139 | 3 min | Lishensuo

August  6

图神经网络DGL-02同构图_节点分类

Create: 2022-08-28 | Update: 2022-08-28 | Words: 1681 | 4 min | Lishensuo

图神经网络DGL-03同构图_边回归

Create: 2022-08-28 | Update: 2022-08-28 | Words: 2070 | 5 min | Lishensuo

图神经网络DGL-03同构图_边预测

Create: 2022-08-28 | Update: 2022-08-28 | Words: 2072 | 5 min | Lishensuo

机器学习基于sklearn(1)–sklearn基础

Create: 2022-08-23 | Update: 2022-08-23 | Words: 1741 | 4 min | Lishensuo

深度学习D2L–03–K折交叉验证的torch训练基础流程

Create: 2022-08-23 | Update: 2022-08-23 | Words: 882 | 2 min | Lishensuo

文献–乳腺癌单细胞转录组图谱

Create: 2022-08-06 | Update: 2022-08-06 | Words: 1819 | 4 min | Lishensuo

July  11

深度学习D2L–01–线性回归

Create: 2022-07-31 | Update: 2022-07-31 | Words: 642 | 2 min | Lishensuo

深度学习D2L–02–softmax多分类

Create: 2022-07-31 | Update: 2022-07-31 | Words: 1277 | 3 min | Lishensuo

图神经网络DGL-01-DGL基础

Create: 2022-07-31 | Update: 2022-07-31 | Words: 1335 | 3 min | Lishensuo

Python-可视化-pandas绘图

Create: 2022-07-30 | Update: 2022-07-30 | Words: 566 | 2 min | Lishensuo

R-可视化-ggpubr包快速绘制点图、线图与柱状图

Create: 2022-07-23 | Update: 2022-07-23 | Words: 964 | 2 min | Lishensuo

统计学基础–重抽样Bootstrap与置换检验permutation test

Create: 2022-07-10 | Update: 2022-07-10 | Words: 896 | 2 min | Lishensuo

统计学-生信中常见统计指标

Create: 2022-07-10 | Update: 2022-07-10 | Words: 78 | 1 min | Lishensuo

单细胞分析工具–hdWGCNA共表达网络

Create: 2022-07-07 | Update: 2022-07-07 | Words: 1850 | 4 min | Lishensuo

机器学习基于R包mlr3(14)–聚类-k均值

Create: 2022-07-06 | Update: 2022-07-06 | Words: 2566 | 6 min | Lishensuo

文献–32种乳腺癌细胞系单细胞转录组图谱

Create: 2022-07-06 | Update: 2022-07-06 | Words: 1779 | 4 min | Lishensuo

R-可视化-ggplot2绘图基础

Create: 2022-07-03 | Update: 2022-07-03 | Words: 1267 | 3 min | Lishensuo

June  12

机器学习基于R包mlr3(1)–分类–KNN

Create: 2022-06-30 | Update: 2022-06-30 | Words: 1354 | 3 min | Lishensuo

机器学习基于R(0)–mlr3基本流程

Create: 2022-06-26 | Update: 2022-06-26 | Words: 3007 | 7 min | Lishensuo

R-数据分析-reshape2表格长短转换

Create: 2022-06-25 | Update: 2022-06-25 | Words: 580 | 2 min | Lishensuo

机器学习基于R包mlr3(15)–聚类-层次聚类

Create: 2022-06-18 | Update: 2022-06-18 | Words: 872 | 2 min | Lishensuo

机器学习基于R包mlr3(16)–聚类-EM混合分布

Create: 2022-06-18 | Update: 2022-06-18 | Words: 2237 | 5 min | Lishensuo

文献–基于药物干扰转录组建立距离网络用于药物重定向

Create: 2022-06-18 | Update: 2022-06-18 | Words: 1647 | 4 min | Lishensuo

可视化–R–热图heatmap

Create: 2022-06-12 | Update: 2022-06-12 | Words: 2959 | 6 min | Lishensuo

差异分析R包-DESeq2+edgeR+limma

Create: 2022-06-11 | Update: 2022-06-11 | Words: 2476 | 5 min | Lishensuo

文献–AD小鼠空间转录组数据分析

Create: 2022-06-10 | Update: 2022-06-10 | Words: 2887 | 6 min | Lishensuo

统计学基础–二分类模型评价指标

Create: 2022-06-09 | Update: 2022-06-09 | Words: 1551 | 4 min | Lishensuo

使用Seurat包分析空间转录组数据

Create: 2022-06-05 | Update: 2022-06-05 | Words: 1831 | 4 min | Lishensuo

统计学基础–相关性与一致性

Create: 2022-06-02 | Update: 2022-06-13 | Words: 2460 | 5 min | Lishensuo

May  25

文献–基于通路富集的药物重定向(以AD药物为例)

Create: 2022-05-31 | Update: 2022-05-31 | Words: 2095 | 5 min | Lishensuo

人类基因组基础知识与下载查询

Create: 2022-05-28 | Update: 2022-05-28 | Words: 3802 | 8 min | Lishensuo

基因-蛋白-化合物ID转换

Create: 2022-05-28 | Update: 2023-01-22 | Words: 1107 | 3 min | Lishensuo

文献–synergyfinder包计算协同评价指标

Create: 2022-05-27 | Update: 2022-05-27 | Words: 2797 | 6 min | Lishensuo

单细胞分析工具–cellranger

Create: 2022-05-24 | Update: 2023-01-25 | Words: 1522 | 4 min | Lishensuo

shiny包开发网页APP基础

Create: 2022-05-22 | Update: 2022-05-22 | Words: 3329 | 7 min | Lishensuo

机器学习基于R包mlr3(13)–降维t-SNE与UMAP

Create: 2022-05-21 | Update: 2022-05-21 | Words: 1722 | 4 min | Lishensuo

Python数据科学-(4)Matplotlib可视化

Create: 2022-05-19 | Update: 2022-05-28 | Words: 2632 | 6 min | Lishensuo

文献–从相关性网络中鉴定节点间的直接调控关系

Create: 2022-05-19 | Update: 2022-05-20 | Words: 2155 | 5 min | Lishensuo

R语言的多线程循环语句

Create: 2022-05-17 | Update: 2022-05-17 | Words: 508 | 2 min | Lishensuo

在Linux系统里部署Jupyter环境

Create: 2022-05-15 | Update: 2022-05-15 | Words: 1947 | 4 min | Lishensuo

Linux的parallel并行方法

Create: 2022-05-15 | Update: 2022-05-15 | Words: 584 | 2 min | Lishensuo

linux进程管理与后台运行

Create: 2022-05-14 | Update: 2022-05-14 | Words: 1549 | 4 min | Lishensuo

docker初学

Create: 2022-05-14 | Update: 2022-05-14 | Words: 1009 | 3 min | Lishensuo

统计学基础–方差分析与卡方检验

Create: 2022-05-13 | Update: 2022-05-23 | Words: 3208 | 7 min | Lishensuo

矩阵相似性计算样本通路一致性

Create: 2022-05-13 | Update: 2022-05-17 | Words: 1807 | 4 min | Lishensuo

机器学习基于R包mlr3(12)–降维–PCA

Create: 2022-05-12 | Update: 2022-05-12 | Words: 1997 | 4 min | Lishensuo

统计学基础–以T检验为例学习基于中心极限定理的假设检验

Create: 2022-05-10 | Update: 2022-06-14 | Words: 3596 | 8 min | Lishensuo

R语言RSelenium爬虫.md

Create: 2022-05-10 | Update: 2022-05-10 | Words: 4006 | 8 min | Lishensuo

机器学习基于R包mlr3(11)–回归–kNN+随机森林+XGBboost

Create: 2022-05-08 | Update: 2022-05-08 | Words: 1307 | 3 min | Lishensuo

R-数据分析-dplyr表格操作

Create: 2022-05-08 | Update: 2022-05-08 | Words: 2320 | 5 min | Lishensuo

机器学习基于R包mlr3(10)–回归–岭回归+LASSO回归+弹性网络

Create: 2022-05-07 | Update: 2022-05-07 | Words: 2477 | 5 min | Lishensuo

文献–综合多种分析建立TNBC预后模型

Create: 2022-05-06 | Update: 2022-05-06 | Words: 2226 | 5 min | Lishensuo

Python数据科学-(3)Pandas表格

Create: 2022-05-03 | Update: 2022-05-10 | Words: 4627 | 10 min | Lishensuo

数据库–药物与药物靶点TTD

Create: 2022-05-03 | Update: 2022-05-03 | Words: 1517 | 4 min | Lishensuo

April  52

TCGAbiolinks包-TCGA数据下载与差异分析

Create: 2022-04-30 | Update: 2022-05-06 | Words: 4785 | 10 min | Lishensuo

表达矩阵TPM,FPKM标准化

Create: 2022-04-30 | Update: 2022-04-30 | Words: 934 | 2 min | Lishensuo

从GEO下载芯片或RNAseq测序数据

Create: 2022-04-30 | Update: 2022-04-30 | Words: 1791 | 4 min | Lishensuo

Python数据科学-(2)Numpy数组(torch张量)

Create: 2022-04-29 | Update: 2022-06-07 | Words: 2658 | 6 min | Lishensuo

基于PPI网络的靶点群距离预测药物组合

Create: 2022-04-29 | Update: 2022-04-29 | Words: 980 | 2 min | Lishensuo

机器学习基于R包mlr3(9)–回归–GAM非线性回归

Create: 2022-04-27 | Update: 2022-04-27 | Words: 1047 | 3 min | Lishensuo

Python数据科学-(1)IPython的特点

Create: 2022-04-26 | Update: 2022-04-26 | Words: 899 | 2 min | Lishensuo

050快捷键

Create: 2022-04-26 | Update: 2022-04-26 | Words: 170 | 1 min | Lishensuo

WGCNA基因加权共表达网络分析

Create: 2022-04-25 | Update: 2022-05-06 | Words: 5111 | 11 min | Lishensuo

xCell与CIBERSORT等免疫浸润分析

Create: 2022-04-25 | Update: 2023-02-18 | Words: 2554 | 6 min | Lishensuo

机器学习基于R包mlr3(8)–回归–线性回归

Create: 2022-04-22 | Update: 2022-04-22 | Words: 1803 | 4 min | Lishensuo

window系统快速安装ubuntu子系统

Create: 2022-04-22 | Update: 2022-04-22 | Words: 1228 | 3 min | Lishensuo

CMap数据库整理与使用方法

Create: 2022-04-21 | Update: 2022-04-21 | Words: 2399 | 5 min | Lishensuo

MsigDB基因集数据库

Create: 2022-04-21 | Update: 2022-05-06 | Words: 2279 | 5 min | Lishensuo

重启随机游走算法与RandomWalkRestartMH包

Create: 2022-04-19 | Update: 2022-04-19 | Words: 1887 | 4 min | Lishensuo

统计学基础–统计描述指标与常见统计分布

Create: 2022-04-18 | Update: 2022-06-10 | Words: 3206 | 7 min | Lishensuo

Python基础-(8)常用基础模块Module

Create: 2022-04-17 | Update: 2022-04-17 | Words: 1922 | 4 min | Lishensuo

Python基础-(9)文本读写与pickle保存

Create: 2022-04-17 | Update: 2022-09-20 | Words: 1158 | 3 min | Lishensuo

conda环境下载管理软件、R包

Create: 2022-04-16 | Update: 2022-04-16 | Words: 1505 | 4 min | Lishensuo

服务器外网文件传输–奶牛快传、阿里云盘

Create: 2022-04-16 | Update: 2022-04-16 | Words: 753 | 2 min | Lishensuo

单细胞分析工具–Seurat4基础流程

Create: 2022-04-16 | Update: 2023-01-12 | Words: 2304 | 5 min | Lishensuo

单细胞分析工具–monocle轨迹分析

Create: 2022-04-16 | Update: 2022-04-16 | Words: 2709 | 6 min | Lishensuo

单细胞分析工具–CellChat细胞通讯分析

Create: 2022-04-16 | Update: 2022-04-16 | Words: 5037 | 11 min | Lishensuo

单细胞分析工具–pySCENIC转录因子分析

Create: 2022-04-16 | Update: 2022-04-16 | Words: 2838 | 6 min | Lishensuo

下载测序数据SRR与fastq.gz方式

Create: 2022-04-16 | Update: 2022-05-23 | Words: 559 | 2 min | Lishensuo

Refgenie下载参考基因组

Create: 2022-04-16 | Update: 2022-04-16 | Words: 1243 | 3 min | Lishensuo

STRINGdb包下载蛋白PPI数据

Create: 2022-04-16 | Update: 2022-04-16 | Words: 340 | 1 min | Lishensuo

使用clusterProfiler下载GO&KEGG通路基因

Create: 2022-04-16 | Update: 2022-04-16 | Words: 528 | 2 min | Lishensuo

使用IsoformSwitchAnalyzeR包进行可变剪切分析

Create: 2022-04-16 | Update: 2022-04-16 | Words: 3284 | 7 min | Lishensuo

EnhancedVolcano包绘制火山图

Create: 2022-04-16 | Update: 2022-04-16 | Words: 980 | 2 min | Lishensuo

正则表达式基础

Create: 2022-04-16 | Update: 2022-04-16 | Words: 551 | 2 min | Lishensuo

机器学习基于R包mlr3(6)–分类–决策树与随机森林

Create: 2022-04-16 | Update: 2022-04-16 | Words: 3559 | 8 min | Lishensuo

R基础配置

Create: 2022-04-16 | Update: 2022-04-16 | Words: 244 | 1 min | Lishensuo

使用igraph包进行网络结构分析与可视化

Create: 2022-04-16 | Update: 2022-05-17 | Words: 2209 | 5 min | Lishensuo

shell基础–变量名字符串操作

Create: 2022-04-16 | Update: 2022-04-16 | Words: 531 | 2 min | Lishensuo

shell基础–find查找文件

Create: 2022-04-16 | Update: 2022-04-16 | Words: 219 | 1 min | Lishensuo

shell基础–tar.gz相关、gzip压缩与pigz多线程

Create: 2022-04-16 | Update: 2022-04-16 | Words: 413 | 1 min | Lishensuo

shell基础–grep等文本处理命令

Create: 2022-04-16 | Update: 2022-04-16 | Words: 1483 | 3 min | Lishensuo

obabel化学小分子格式转换

Create: 2022-04-16 | Update: 2022-04-16 | Words: 1296 | 3 min | Lishensuo

Python基础-(1)初识

Create: 2022-04-10 | Update: 2022-05-14 | Words: 435 | 1 min | Lishensuo

Python基础-(2)列表、元组、字符串、字典

Create: 2022-04-10 | Update: 2022-05-14 | Words: 2240 | 5 min | Lishensuo

Python基础-(3)条件与循环语句

Create: 2022-04-10 | Update: 2022-04-10 | Words: 682 | 2 min | Lishensuo

Python基础-(4)函数Function

Create: 2022-04-10 | Update: 2022-04-10 | Words: 580 | 2 min | Lishensuo

Python基础-(5)类Class与实例Instance

Create: 2022-04-10 | Update: 2022-05-29 | Words: 1423 | 3 min | Lishensuo

Python基础-(6)捕捉异常Error

Create: 2022-04-10 | Update: 2022-05-30 | Words: 813 | 2 min | Lishensuo

Python基础-(7)模块/包Module

Create: 2022-04-10 | Update: 2022-04-10 | Words: 928 | 2 min | Lishensuo

文献–AD星形胶质与小胶质细胞的单细胞数据分析

Create: 2022-04-10 | Update: 2022-04-10 | Words: 1983 | 4 min | Lishensuo

机器学习基于R包mlr3(2)–分类–逻辑回归.md

Create: 2022-04-10 | Update: 2022-07-01 | Words: 1297 | 3 min | Lishensuo

机器学习基于R包mlr3(3)–分类–LDA与QDA

Create: 2022-04-10 | Update: 2022-07-01 | Words: 1278 | 3 min | Lishensuo

机器学习基于R包mlr3(4)–分类–朴素贝叶斯

Create: 2022-04-10 | Update: 2022-07-01 | Words: 1160 | 3 min | Lishensuo

机器学习基于R包mlr3(5)–分类–SVM

Create: 2022-04-10 | Update: 2022-04-10 | Words: 1695 | 4 min | Lishensuo

文献–四逆散与非酒精性脂肪肝网药分析

Create: 2022-04-10 | Update: 2022-04-28 | Words: 1203 | 3 min | Lishensuo